Intelligent Imaging Innovations Cleared Tissue Light Sheet (3i CTLS)

The technique employed on this instrument is Light Sheet Microscopy.

Experiment information

The 3i CTLS is suitable for live or fixed clear samples, whether that is artificial (through clearing), or natural. For live samples, they must be viable at room temperature as there is little to no environmental control. The sample chamber can handle relatively large samples up to the size of about 20 x 50 x 18mm, or multiple samples in a high throughput organisation. This system is suitable for many applications, including: imaging cells embedded in gels, cleared tissue samples from human (biopsies) and animals, including whole organs (for example, kidney, liver, eyes) or even whole organisms (up to the size of neonatal mice).

Samples are held on a 3D-printed device that magnetically attaches to a motorised stage. The 3D-printed device can be custom designed to fit your sample, but usually we glue the sample to the spoon with a UV-curing adhesive that is easily removed afterwards. Alternatively, if the sample is the right size, it can be clamped in place. This works well for gel-like samples that will not adhere to glue well.

There are a variety of configurations listed below, but we generally use the 10x illumination objective coupled with the 1.5x detection objective to give the best range of resolution, field of view and light sheet thickness, while compromising on maximum sample size. Discussion with a link scientist will help to determine the best configuration for your samples.

Technical specifications

Objectives  Detection:1.0x/0.25 Air, 1.5x/0.37 Air, 2.3x/0.57 Air with lateral resolution down to 300nm and axial resolution down to 8 um (see below graph). 

Illumination:5x/0.14 Air (2.4 to 21 micron thickness and 0.5 to 4mm length), 10x/0.28 Air (1.7 to 16 micron thickness and 0.5 – 2mm length). 

Lasers  405, 445, 488, 514, 561, 594 and 640nm lines. Only possible to use 4 lines for a single acquisition due to software limitations. All lasers line are <1mW at the objective. 

 

Filters  505 to 545nm, 573 to 637nm, 580 to 654nm, 663 to 733nm and quad-band 446/523/600/677-25nm 
Camera  Up to 30fps with Hamamatsu ORCA Flash 4.0 V3 sCMOS 
Field of view  Up to 4mm, usually operate at <2mm 
Sample size and mounting  Up to 20 x 18 x 50mm (see below). Glued to a flat surface, or clamped in a suspended position, but custom options are possible. 
Refractive index 

compatibility 

1.33-1.57 
Temperature  Can be controlled through a heated plate to above room temperature (21°C), but not a reliable form of environmental control 

Sample chamber size, volume and working distance:

 

Detection objective lateral resolution: